Statistical Genetics,
Genomics & Immunity
The software and code that is used in our influenza diallel paper can be found at the following GitHub website: flu-diallel repository
The corresponding R package, called "treatmentResponseDiallel", can be used to reproduce analyses in the influenza dialllel paper. It can be installed via instructions at the following link: treatmentResponseDiallel
In order to collect some of the functions that I have written that are useful for working with Collaborative Cross data and various other analyses, I made the following R package: PLMcctools
The following R package contains functions and data that help reproduce analyses in the litter diallel manuscript, now in preparation: litterDiallel
The R code to reproduce analyses in the malaria infant study manuscript, now submitted, is posted here: malariaInfantStudy